For a formatted version of my C.V., please visit http://cv.mhuyck.com J. MATTHEW HUYCK 77 Amory Street Cambridge, Massachusetts 02139 (617) 661-9394 cv2006@mhuyck.com . http://cv.mhuyck.com EDUCATION 8/1991-5/1995 B.S., Cornell University, College of Engineering School of Applied and Engineering Physics (A&EP) Coursework included advanced physics, advanced mathematics, engineering, laboratory instrumentation, computer hardware interfacing, and computer science. Spring, 2003 Boston University, School of Public Health Department of Epidemiology Epidemiology (EB711) Spring, 2003 Boston University, School of Public Health Department of Biostatistics Biostatistics (EB703) Summer, 2003 Boston University, School of Public Health Department of Biostatistics Applied Linkage Analysis (BS859) MAJOR INTERESTS 1. Systems Biology, Bioinformatics and Biostatistics 2. Visualization and Information Design 3. Human-Computer Interaction 4. Open Source Software Tools and Development RESEARCH EXPERIENCE 6/2006-present Harvard Medical School, Boston, MA Center for Biomedical Informatics, Computational Biology Initiative Creating natural language processing tools to extract knowledge from biomedical literature. Responsibilities include evaluating methods and software for an automated text retrieval system, designing and implementing a software architecture to support integration of all system components, creating and enhancing components using Java and database development expertise, and fostering communication among team members at multiple sites by supporting a collaborative online discussion environment. 1/2003-5/2006 Boston University, Boston, MA College of Medicine, Genetics Program Database specialist responsible for performing statistical analysis and creating and maintaining data collection and extraction procedures for MIRAGE (an international, multi-center study into the genetic and environmental causes of Alzheimer Disease) and associated studies. 3/2002-present Brigham and Women's Hospital/Harvard Medical School, Boston, MA Departments of Pathology and of Obstetrics, Gynecology, and Reproductive Biology Sole technical consultant for the Center for Uterine Fibroids and the "Finding Genes for Fibroids Study," a large international study to identify susceptibility genes for uterine fibroids. I have streamlined, enhanced and linked two databases maintained in Microsoft Access and Excel containing all DNA, contact information and data collection records from over 1500 study participants. I also provide ongoing support for the study's web site and assist with SAS programming. PROFESSIONAL EXPERIENCE 1/2003-present SAS and Biostatistics Tutor Provide SAS and biostatistics tutoring to area biomedical and public health graduate students. 6/1995-5/2001 Team Leader and Project Manager, Internet Consulting Primix New England Technical, Watertown, MA As Primix' primary representative to many clients, I led all phases of the development lifecycle: conception, requirements analysis, development, deployment, and maintenance. Projects involved technical development, creative design and business strategy for systems integration and web-based projects. Each new project required adaptability and rapid learning about the client's business. Team size and composition ranged from two or three developers to larger, more diverse teams including business management, software development, graphic design and marketing professionals. All positions involved problem solving, coordinating team interactions, and facilitating client communication. I also planned and implemented project budgets and timelines. Summer 1994, 1993 Programmer Cornell University Department of Physics, Ithaca, NY 11/1992-5/1995 Student Representative Apple Computer, Inc., at Cornell University, Ithaca, NY HONORS AND AWARDS 2000 Integrity culture award granted by Primix Core Values team 1999 Waters MVP award granted by Primix teammates 1998 Team Spirit award granted by Primix management 3/1994-3/1995 President, Cornell Engineering Physics Society 1990 Finalist, SuperQuest High School Supercomputing Competition 1990 Semifinalist, Westinghouse Science Talent Search BIBLIOGRAPHY Journal Publications: 1. Saleh M, Vaillancourt JP, Graham RK, Huyck M, Srinivasula SM, Alnemri ES, Steinberg MH, Nolan V, Baldwin CT, Hotchkiss RS, Buchman TG, Zehnbauer BA, Hayden MR, Farrer LA, Roy S, Nicholson DW. Differential modulation of endotoxin responsiveness by human caspase-12 polymorphisms. Nature. 429(6987):75-9, 2004. 2. Yip AG, Green RC, Huyck M, Cupples LA, Farrer LA; MIRAGE Study Group. Nonsteroidal anti-inflammatory drug use and Alzheimer's disease risk: the MIRAGE Study. BMC Geriatrics. 5(1):2, 2005. 3. Erlich PM, Lunetta KL, Cupples LA, Huyck M, Green RC, Baldwin CT, Farrer LA; MIRAGE Study Group. Polymorphisms in the PON gene cluster are associated with Alzheimer disease. Human Molecular Genetics. 15(1):77-85, 2006. 4. Akomolafe A, Lunetta KL, Erlich PM, Cupples LA, Baldwin CT, Huyck M, Green RC, Farrer LA; MIRAGE Study Group. Genetic association between endothelial nitric oxide synthase and Alzheimer disease. Clinical Genetics. 70(1):49-56, 2006. Abstracts: 1. Roth M, Huyck M, Green RC: Predictors of Progression through the Recruitment Process, from Questionnaire response to Enrollment, in an Alzheimer's Disease (AD) Primary Prevention Trial. Presented at the Alzheimer's Association International Conference on Prevention of Dementia, Washington, D.C., June 19, 2005. 2. Akomolafe A, Lunetta KL, Erlich PM, Cupples LA, Baldwin CT, Huyck M, Green RC, Farrer LA: Genetic Association between endothelial Nitric Oxide Synthase (NOS3) and Alzheimer disease: The MIRAGE Study. Presented at the American Society of Human Genetics Annual Meeting, Salt Lake City, UT, October 28, 2005. 3. Erlich PM, Lunetta KL, Cupples LA, Huyck M, Green RC, Baldwin CT, Farrer LA: Polymorphisms in paraoxonase are associated with Alzheimer Disease in African Americans and Caucasians. Presented at the American Society of Human Genetics Annual Meeting, Salt Lake City, UT, October 28, 2005. LEADERSHIP ROLES I have over four years of experience as Team Leader, Project Manager or Business Manager on software development projects. Selected Project Leadership Experience 2/2001-5/2001 Team Leader, A.T. Cross e-Commerce Site Enhancements Tested, redesigned and deployed several enhancements to Cross' production e-Commerce site. As Team Leader, I was responsible for coordinating the efforts of three developers and resolving numerous technical issues. 4/1999-10/1999 Project Manager, Waters Corporation e-Commerce Solution This project created the first e-Commerce venture for Waters, allowing them to sell HPLC columns and accessories online. As Project Manager, I integrated a diverse client team with a diverse project team to produce an e-Commerce application that was seamlessly integrated with Waters' existing web site and order processing infrastructure. I also won final client approval and successfully managed the budget and time lines on this fixed-price, fixed-time engagement. Selected Business Leadership Experience 6/2000-5/2001 Manager, Primix New England Technical Provided mentorship and career guidance for members of the technical group. Performed quarterly checkpoints and annual performance reviews. Made salary, bonus and promotion recommendations. 4/2000-5/2000 Member, Primix People Management Task Force Selected by Primix senior management to redesign the management structure for the company's largest department, the technical staff. Produced clearly documented guidelines and recommendations that became the management structure for the entire company. SOFTWARE DEVELOPMENT SKILLS * Statistical Software: SAS, R, S-Plus * Programming and Scripting Languages: Perl, Java, PHP, C, SQL, Visual Basic, C++, ABAP/4, FORTRAN * Operating Systems: Mac OS (all versions), Windows 98/NT/2000/XP, UNIX (Linux, Darwin, HPUX, AIX) * Packages and Development Tools: Apache; MySQL; gcc; CVS; Microsoft SQL Server, Access, Visual Studio, Visual SourceSafe; SAP R/3's Development Workbench; Documentum 4i content management; Autonomy and Semio knowledge management; SAQQARA ProductServer (formerly StepSearch); MATLAB; OpenDX visualization * Other: HTML; CSS; Visio; Adobe Photoshop, Illustrator, PageMaker; TextMate; BBEdit; Microsoft PowerPoint; WML (Openwave.com); hardware interfacing via the Parallax BASIC Stamp Microcontroller Selected Software Development Experience 8/2000-1/2001 Team Leader, Primix, Sales and Marketing Portal Design Led a cross-disciplinary team of business and technical professionals in designing and documenting a knowledge management portal to allow a manufacturer of information storage systems to communicate with a large and rapidly expanding sales force. The project integrated conflicting requirements from several independent departments and three formerly separate intranet sites. This system serves thousands of employees worldwide. 12/1999-6/2000 Team Leader, Primix, Rockwell Collins ESS Enhancements Built, tested and deployed enhancements to a complex Employee Self-Service (ESS) application that supports thousands of Rockwell Collins employees. Worked primarily to improve the employee timecard system and to integrate it with SAP R/3's HR module. Redesigned the integration infrastructure to improve system scalability. 1993, 1994 (summers) Programmer, Department of Physics, Cornell University Designed and wrote computer code to perform numerical simulations on the IBM SP1 parallel supercomputer. Experience using PVM and MPI libraries. Attended workshops at the Cornell Theory Center on parallel and performance programming. PARTICIPATION IN PROFESSIONAL TRAINING AND CONFERENCES 1. BioIT World, Boston, MA, March, 2002 2. O'Reilly Bioinformatics, Tucson, AZ, January, 2002 3. Technical Fundamentals for Documentum 4i, Documentum (Content Management), Hopkinton, MA, October, 2000 4. Mastering Modern Project Management, Project Management Partners, Watertown, MA, August, 2000 5. ACM SIGCHI Conference on Human Factors in Computing Systems, Los Angeles, CA, April, 1998 6. Developing Distributed Objects using Orbix, Semaphore (CORBA), Cambridge, MA, June, 1997 7. Java for C and C++ Programmers, Deitel & Associates, Inc., Cambridge, MA, January, 1997 8. C++ and Object-Oriented Technology, Deitel & Associates, Inc., Cambridge, MA, September, 1995 9. ABAP/4 Programming (JSB25), SAP America, Inc., Irving, TX, September, 1995 10. R/3 System Administration I (JSB10), SAP America, Inc., Parsippany, NJ, August, 1995